PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1228
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 353aa    MW: 39239.4 Da    PI: 8.2943
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1228genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.33.4e-1734125286
     trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt +e+++Liea++ ++er  +++          + +W++v +++++rg+ rs++qC++kw+nl ++ykk++e +++ t++++ +   + ++e
  Gh_A06G1228  34 WTVNETMVLIEAKKMDDERRMKKSwegegkgkPTELRWKWVEDYCWSRGCLRSQNQCNDKWDNLMRDYKKVREYQRR-TAGAEDNQGSYWEME 125
                  *************97766666532222233339999***************************************98.577777888888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0392698IPR017877Myb-like domain
PfamPF138371.5E-1233125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVVNTLPTGV AGTLAMADQG GNNIGMREYR KGNWTVNETM VLIEAKKMDD ERRMKKSWEG  60
EGKGKPTELR WKWVEDYCWS RGCLRSQNQC NDKWDNLMRD YKKVREYQRR TAGAEDNQGS  120
YWEMEKNERK EKNLPTNMLR QIYECLEEVV DKKGGQRVVL LATATASGSL PIPNIPDVMD  180
RPITSVQLPP ILQHQLPPIP AAVPLPLTAP PQLPLPTAAP TPLLQPPFSY AQPLPTVDSD  240
TSEYSDSLAK RRRRSGGNGE GTSSGAATAN NSNEAGIAIS KSASIIAEAI QASEENEERR  300
HRDLVSLHER ILKIEESKTE INKRGIDGLV DAINKLANSI LAFASHKNQS APK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.25471e-102boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5899022e-60JX589902.1 Gossypium hirsutum clone NBRI_GE24692 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452807.10.0PREDICTED: uncharacterized protein LOC105774776
TrEMBLA0A0B0MU800.0A0A0B0MU80_G
STRINGPOPTR_0012s11820.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.16e-72Trihelix family protein